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XYCLONE PUBLICATIONS

2013
Amiel AR, Henry JQ, Seaver EC. An organizing activity is required for head patterning and cell fate
specification in the polychaete annelid Capitella teleta: New insights into cell-cell signaling in
Lophotrochozoa. Dev Biol. 2013 Apr 19. doi:pii: S0012-1606(13)00191-7.
10.1016/j.ydbio.2013.04.011. [Epub ahead of print] PubMed PMID: 23608
Chailert C, Sanmee U, Piromlertamorn W, Samchimchom S, Vutyavanich T. Effects of partial or
complete laser-assisted hatching on the hatching of mouse blastocysts and their cell numbers. Reprod
Biol Endocrinol. 2013 Mar 19;11(1):21. [Epub ahead of print] PubMed PMID: 23510434.
Cocero MJ, Sánchez P, Folch J, Lahoz B, Calvo JH, Quintín F, Sevilla E, Alabart JL.
Laser-assisted embryo biopsy allows preimplantational genetic diagnosis without decreasing embryo
survival in sheep. XV Jornadas sobre Producción Animal, Zaragoza 14 y 15 de mayo de 2013 2013 pp.
371-373. (Spanish, abstract in English)
Hatanaka Y, Shimizu N, Nishikawa S, Tokoro M, Shin SW, Nishihara T, Amano T, Anzai M, Kato H,
Mitani T, Hosoi Y, Kishigami S, Matsumoto K. GSE Is a Maternal Factor Involved in Active DNA
Demethylation in Zygotes. PLoS One. 2013;8(4):e60205. doi: 10.1371/journal.pone.0060205. Epub
2013 Apr 1. PubMed PMID: 23560077.
Hornick JE, Duncan FE, Shea LD, Woodruff TK. Multiple follicle culture supports primary follicle
growth through paracrine-acting signals. Reproduction. 2013 Jan 8;145(1):19-32. doi: 10.1530/REP-
12-0233. Print 2013. Epub 2012 Oct 29 PubMed PMID: 23108112.
Ishizuka Y, Nishimura M, Matsumoto K, Miyashita M, Takeo T, Nakagata N, Hosoi Y, Anzai M. The
influence of reduced glutathione in fertilization medium on the fertility of in vitro-matured C57BL/6
mouse oocytes. Theriogenology. 2013 Aug 2. doi:pii: S0093-691X(13)00263-X.
10.1016/j.theriogenology.2013.07.002. [Epub ahead of print] PubMed PMID: 23916252.
Jiao ZX, Woodruff TK. Detection and quantification of maternal-effect gene transcripts in mouse
second polar bodies: potential markers of embryo developmental competence. Fertil Steril. 2013 Mar
2. doi:pii:S0015-0282(13)00259-8. 10.1016/j.fertnstert.2013.02.003. [Epub ahead of print]
PubMed PMID: 23465709
Li MW, Kinchen KL, Vallelunga JM, Young DL, Wright KD, Gorano LN, Wasson K, Lloyd K.
Safety, efficacy and efficiency of laser assisted IVF in subfertile mutant mouse strains. Reproduction.
2013 Jan 11. [Epub ahead of print] PubMed PMID: 23315689.
Hamilton Thorne, Inc., 100 Cummings Center, Suite 465E, Beverly, MA 01915-6143 USA, 978.921.2050, 800.323.0503, Fax: 978.921.0250
Matrone G, Taylor JM, Wilson KS, Baily J, Love GD, Girkin JM, Mullins JJ, Tucker CS, Denvir MA.
Laser-targeted ablation of the zebrafish embryonic ventricle: A novel model of cardiac injury and
repair. Int J Cardiol. 2013 Jul 17. doi:pii: S0167-5273(13)01117-0. 10.1016/j.ijcard.2013.06.063.
[Epub ahead of print] PubMed PMID: 23871347
Paull D, Emmanuele V, Weiss KA, Treff N, Stewart L, Hua H, Zimmer M, Kahler DJ, Goland RS,
Noggle SA, Prosser R, Hirano M, Sauer MV, Egli D. Nuclear genome transfer in human oocytes
eliminates mitochondrial DNA variants. Nature. 2013 Jan 31;493(7434):632-7. doi:
10.1038/nature11800. Epub 2012 Dec 19. PubMed PMID: 23254936.
Putkhao K, Kocerha J, Cho IK, Yang J, Parnpai R, Chan AW. Pathogenic Cellular Phenotypes are
Germline Transmissible in a Transgenic Primate Model of Huntington's Disease. Stem Cells Dev. 2013
Jan 15. [Epub ahead of print] PubMed PMID: 23190281
Tachibana M, Amato P, Sparman M, Gutierrez NM, Tippner-Hedges R, Ma H, Kang E,
Fulati A, Lee HS, Sritanaudomchai H, Masterson K, Larson J, Eaton D, Sadler-Fredd K, Battaglia D,
Lee D, Wu D, Jensen J, Patton P, Gokhale S, Stouffer RL, Wolf D, Mitalipov S. Human Embryonic
Stem Cells Derived by Somatic Cell Nuclear Transfer. Cell. 2013 May 15. doi:pii: S0092-
8674(13)00571-0. 10.1016/j.cell.2013.05.006. [Epub ahead of print] PubMed PMID:
Taylor JM, Girkin JM, Love GD. High-resolution 3D optical microscopy inside the beating zebrafish
heart using prospective optical gating. Biomed Opt Express. 2012 Dec 1;3(12):3043-53. doi:
10.1364/BOE.3.003043. Epub 2012 Oct 31. PubMed PMID: 23243558; PubMed Central PMCID:
PMC3521314.
2012

Alliegro MC, Hartson S, Alliegro MA. Composition and dynamics of the nucleolinus, a link between
the nucleolus and cell division apparatus in surf clam (Spisula) oocytes. J Biol Chem. 2012 Feb
24;287(9):6702-13. Epub 2012 Jan 4. PubMed PMID: 22219192; PubMed Central PMCID:
PMC3307295.
Bui HT, Kwon DN, Kang MH, Oh MH, Park MR, Park WJ, Paik SS, Van Thuan N, Kim JH.
Epigenetic reprogramming in somatic cells induced by extract from germinal vesicle stage pig oocytes.
Development. 2012 Dec;139(23):4330-40. doi: 10.1242/dev.086116. PubMed PMID: 23132243.
Jeon K, Lim H, Kim JH, Thuan NV, Park SH, Lim YM, Choi HY, Lee ER, Kim JH, Lee MS, Cho SG.
Differentiation and transplantation of functional pancreatic beta cells generated from induced
pluripotent stem cells derived from a type 1 diabetes mouse model. Stem Cells Dev. September 20,
2012, 21(14): 2642-2655. doi:10.1089/scd.2011.0665. Epub 2012 Apr 19
Lee HS, Ma H, Cervera Juanes R, Tachibana M, Sparman M, Woodward J, Ramsey C, Xu J, Kang EJ,
Amato P, Mair G, Steinborn R, Mitalipov S, Rapid Mitochondrial DNA Segregation in Primate
Hamilton Thorne, Inc., 100 Cummings Center, Suite 465E, Beverly, MA 01915-6143 USA, 978.921.2050, 800.323.0503, Fax: 978.921.0250 Preimplantation Embryos Precedes Somatic and Germline Bottleneck, Cell Reports 2012 May 31
1(5):506-515. Epub 3 May 2012 doi:10.1016/j.celrep.2012.03.
Lyons DC, Perry KJ, Lesoway MP, Henry JQ. Cleavage pattern and fate map of the mesentoblast, 4d,
in the gastropod Crepidula: a hallmark of spiralian development. Evodevo. 2012 Sep 19;3(1):21. doi:
10.1186/2041-9139-3-21. PubMed PMID: 22992254.
Paull D, Emmanuele V, Weiss KA, Treff N, Stewart L, Hua H, Zimmer M, Kahler DJ, Goland RS,
Noggle SA, Prosser R, Hirano M, Sauer MV, Egli D. Nuclear genome transfer in human oocytes
eliminates mitochondrial DNA variants. Nature. 2012 Dec 19. doi: 10.1038/nature11800. [Epub ahead
of print] PubMed PMID: 23254936.
Pernet, B, Amiel A, Seaver EC. Effects of maternal investment on larvae and juveniles of the annelid
Capitella teleta determined by experimental reduction of embryo energy content. Invertebr Biol 2012
June 131(2): 1744-7410. doi:10.1111/j.1744-7410.2012.00263.x
Reinholdt LG, Howell GR, Czechanski AM, Macalinao DG, MacNicoll KH, et al. (2012) Generating
Embryonic Stem Cells from the Inbred Mouse Strain DBA/2J, a Model of Glaucoma and Other
Complex Diseases. PLoS ONE 7(11): e50081. doi:10.1371/journal.pone.0050081
Smits K, Govaere J, Hoogewijs M, Piepers S, Van Soom A. A pilot comparison of laser-assisted vs
piezo drill ICSI for the in vitro production of horse embryos. Reprod Domest Anim. 2012
Feb;47(1):e1-3.
Tachibana M, Amato P, Sparman M, Woodward J, Sanchis DM, Ma H, Gutierrez NM, Tippner-
Hedges R, Kang E, Lee HS, Ramsey C, Masterson K, Battaglia D, Lee D, Wu D, Jensen J, Patton P,
Gokhale S, Stouffer R, Mitalipov S. Towards germline gene therapy of inherited mitochondrial
diseases. Nature. 2012 Oct 24. doi: 10.1038/nature11647. [Epub ahead of print] PubMed PMID:
23103867.
Tachibana M, Ma H, Sparman ML, Lee HS, Ramsey CM, Woodward JS, Sritanaudomchai H,
Masterson KR, Wolff EE, Jia Y, Mitalipov SM. X-chromosome inactivation in monkey embryos and
pluripotent stem cells. Dev Biol. 2012 Nov 15;371(2):146-55. doi: 10.1016/j.ydbio.2012.08.009. Epub
2012 Aug 23. PubMed PMID: 22935618; PubMed Central PMCID: PMC3466365.
Tachibana M, Sparman M, Ramsey C, Ma H, Lee HS, Penedo MC, Mitalipov S. Generation of
chimeric rhesus monkeys. Cell. 2012 Jan 20;148(1-2):285-95. Epub 2012 Jan 5. PubMed PMID:
22225614; PubMed Central PMCID: PMC3264685.
Wolf XA, Klein T, Garcia R, Hyttel P, Serup P. Identification of a conserved cis-acting region driving
expression of mouse Eomesodermin to the primitive streak, node, and definitive endoderm. Gene Expr
Patterns. 2012 Jan-Feb;12(1-2):85-93. doi: 10.1016/j.gep.2011.06.003. Epub 2011 Jul 8. PubMed
PMID: 21763783.
2011

Hamilton Thorne, Inc., 100 Cummings Center, Suite 465E, Beverly, MA 01915-6143 USA, 978.921.2050, 800.323.0503, Fax: 978.921.0250 Egli D, Chen AE, Saphier G, Ichida J, Fitzgerald C, Go KJ, Acevedo N, Patel J, Baetscher M, Kearns
WG, Goland R, Leibel RL, Melton DA, Eggan K. Reprogramming within hours following nuclear
transfer into mouse but not human zygotes. Nat Commun. 2011 Oct 4;2:488.
doi: 10.1038/ncomms1503. PubMed PMID: 21971503.
Moawad AR, Choi I, Zhu J, Campbell KH. Ovine Oocytes Vitrified at Germinal Vesicle Stage as
Cytoplast Recipients for Somatic Cell Nuclear Transfer (SCNT). Cell Reprogram. 2011
Aug;13(4):289-96. Epub 2011 Jun 30. PubMed PMID: 21718110
Noggle S, Fung HL, Gore A, Martinez H, Satriani KC, Prosser R, Oum K, Paull D, Druckenmiller S,
Freeby M, Greenberg E, Zhang K, Goland R, Sauer MV, Leibel RL, Egli D. Human oocytes
reprogram somatic cells to a pluripotent state. Nature. 2011 Oct 5;478(7367):70-5. doi:
10.1038/nature10397. PubMed PMID: 21979046.
Pryor JH, Looney CR, Romo S, Kraemer DC, Long CR. Cryopreservation of in vitro produced bovine
embryos: effects of lipid segregation and post-thaw laser assisted hatching. Theriogenology. 2011 Jan
1;75(1):24-33. Epub 2010 Sep 15. PubMed PMID: 20833420
Scott BR. Development and permeability of equine blastocysts. A Thesis submitted to the Graduate
Faculty of the Louisiana State University and Agricultural and Mechanical College. May 2011.
Sinko I, Katona RL. Transfer of Stem Cells Carrying Engineered Chromosomes with XY Clone Laser
System. Methods Mol Biol. 2011;738:183-98. PubMed PMID: 21431728.
Siripattarapravat K, Cibelli JB. "Method for somatic cell nuclear transfer in zebrafish." The Zebrafish:
Genetics, Genomics and Informatics, 3rd Edition. Eds., H. William Detrich, III, Monte Westerfield,
Leonard I. Zon. Methods Cell Biol. 2011;104:209-17. PubMed PMID: 21924165.

2010

Aguilar-Gallardo C, Poo M, Gomez E, Galan A, Sanchez E, Marques-Mari A, Ruiz V, Medrano J,
Riboldi M, Valbuena D, Simon C. Derivation, characterization, differentiation, and registration of
seven human embryonic stem cell lines (VAL-3, -4, -5, -6M, -7, -8, and -9) on human feeder. In Vitro
Cell Dev Biol Anim. 2010 Apr;46(3-4):317-26. Epub 2010 Feb 26. PubMed PMID: 20186513.
Alliegro MA, Henry JJ, Alliegro MC. Rediscovery of the nucleolinus, a dynamic RNA-rich organelle
associated with the nucleolus, spindle, and centrosomes. Proc Natl Acad Sci U S A. 2010 Aug
3;107(31):13718-23. Epub 2010 Jul 19. PubMed PMID: 20643950.
Chiasson M. Laser-assisted zona pellucida hatching of frozen-thawed In vivo-produced bovine
embryos. A Thesis submitted to the Graduate Faculty of the Louisiana State University and
Agricultural and Mechanical College. December 2010.
Hamilton Thorne, Inc., 100 Cummings Center, Suite 465E, Beverly, MA 01915-6143 USA, 978.921.2050, 800.323.0503, Fax: 978.921.0250 Choi I, Campbell KH. Treatment of ovine oocytes with caffeine increases the accessibility of DNase I
to the donor chromatin and reduces apoptosis in somatic cell nuclear transfer embryos. Reprod Fertil
Dev. 2010;22(6):1000-14. PubMed PMID: 20591334.
DeChiara TM, Poueymirou WT, Auerbach W, Frendewey D, Yancopoulos GD, Valenzuela DM.
Producing fully ES cell-derived mice from eight-cell stage embryo injections. Methods Enzymol.
2010;476:285-94. PubMed PMID: 20691872.
Estrada J, Li P, Mir B. Multiorgan Engraftment of Human Somatic Cells in Swine Foetuses After
Intra-Blastocyst Transplantation. Reprod Domest Anim. 2010 Nov 23. doi: 10.1111/j.1439-
0531.2010.01718.x. [Epub ahead of print] PubMed PMID:21092066.
Sambasiva Rao B, Uma Mahesh Y, Lakshmikantan UR, Suman K, Venu Charan K, Shivaji S.
Developmental Competence of Oocytes Recovered from Postmortem Ovaries of the Endangered
Indian Blackbuck (Antilope cervicapra). J Reprod Dev. 2010 Aug 11. [Epub ahead of print] PubMed
PMID: 20710122.
Rao BS, Mahesh YU, Suman K, Charan KV, Lakshmikantan U, Gibence HR, Shivaji S. Meiotic
maturation of vitrified immature chousingha (Tetracerus quadricorni) oocytes recovered postmortem.
Cryobiology. 2010 Dec 17. [Epub ahead of print] PubMed PMID: 21168399.
Tachibana M, Sparman M, Mitalipov S. Chromosome transfer in mature oocytes. Nat Protoc.
2010;5(6):1138-47. Epub 2010 May 27. PubMed PMID: 20539289.

2009

Cervera RP, Martí-Gutiérrez N, Escorihuela E, Moreno R, Stojkovic M. Trichostatin A affects histone
acetylation and gene expression in porcine somatic cell nucleus transfer embryos. Theriogenology.
2009 Nov;72(8):1097-110. Epub 2009 Sep 17. PubMed PMID: 19765811.
Chen AE, Egli D, Niakan K, Deng J, Akutsu H, Yamaki M, Cowan C, Fitz-Gerald C, Zhang K, Melton
DA, Eggan K. Optimal timing of inner cell mass isolation increases the efficiency of human embryonic
stem cell derivation and allows generation of sibling cell lines. Cell Stem Cell. 2009 Feb 6;4(2):103-6.
PubMed PMID: 19200798.
Dechiara TM, Poueymirou WT, Auerbach W, Frendewey D, Yancopoulos GD, Valenzuela DM.
VelociMouse: fully ES cell-derived F0-generation mice obtained from the injection of ES cells into
eight-cell-stage embryos. Methods Mol Biol. 2009;530:311-24. PubMed PMID: 19266341.
Egli D, Sandler VM, Shinohara ML, Cantor H, Eggan K. Reprogramming after chromosome transfer
into mouse blastomeres. Curr Biol. 2009 Aug 25;19(16):1403-9. Epub 2009 Aug 13. PubMed PMID:
19682906.
Hamilton Thorne, Inc., 100 Cummings Center, Suite 465E, Beverly, MA 01915-6143 USA, 978.921.2050, 800.323.0503, Fax: 978.921.0250 Huang KW. Archiving biomedical mouse models by ovary cryopreservation. 2009. Dissertation Utrecht
University, Faculty of Veterinary Medicine. ISBN: 978-90-393-5208-3.
Kobolak J, Kiss K, Polgar Z, Mamo S, Rogel-Gaillard C, Tancos Z, Bock I, Baji AG, Tar K, Pirity
MK, Dinnyes A. Promoter analysis of the rabbit POU5F1 gene and its expression in preimplantation
stage embryos. BMC Mol Biol. 2009 Sep 4;10:88. PubMed PMID: 19732419; PubMed Central
PMCID: PMC2751759.
Sato H, Amagai K, Shimizukawa R, Tamai Y. Stable generation of serum- and feeder-free embryonic
stem cell-derived mice with full germline-competency by using a GSK3 specific inhibitor. Genesis.
2009 Jun;47(6):414-22. PubMed PMID:19391115; PubMed Central PMCID: PMC2726955.
Siripattarapravat K, Pinmee B, Venta PJ, Chang CC, Cibelli JB. Somatic cell nuclear transfer in
zebrafish. Nat Methods. 2009 Oct;6(10):733-5. Epub 2009 Aug 30. PubMed PMID: 19718031.
Tachibana M, Sparman M, Sritanaudomchai H, Ma H, Clepper L, Woodward J, Li Y, Ramsey C,
Kolotushkina O, Mitalipov S. Mitochondrial gene replacement in primate offspring and embryonic
stem cells. Nature. 2009 Sep 17;461(7262):367-72. Epub 2009 Aug 26. PubMed PMID: 19710649;
PubMed Central PMCID: PMC2774772.
2008

Hsiao EC, Yoshinaga Y, Nguyen TD, Musone SL, Kim JE, Swinton P, Espineda I, Manalac C, deJong
PJ, Conklin BR. Marking embryonic stem cells with a 2A self-cleaving peptide: a NKX2-5 emerald
GFP BAC reporter. PLoS One. 2008 Jul 2;3(7):e2532. PubMed PMID: 18596956; PubMed Central
PMCID: PMC2430532.
Scherzer J, Fayrer-Hosken RA, Ray L, Hurley DJ, Heusner GL. Advancements in large animal embryo
transfer and related biotechnologies. Reprod Domest Anim. 2008 Jun;43(3):371-6. Epub 2008 Jan 22.
Review. PubMed PMID: 18226021.
Sidhu KS, Walke S, Tuch BE. Derivation and propagation of hESC under a therapeutic environment.
Curr Protoc Stem Cell Biol. 2008 Jul;Chapter 1:Unit 1A.4. PubMed PMID: 18770626.
Turetsky T, Aizenman E, Gil Y, Weinberg N, Shufaro Y, Revel A, Laufer N, Simon A, Abeliovich D,
Reubinoff BE. Laser-assisted derivation of human embryonic stem cell lines from IVF embryos after
preimplantation genetic diagnosis. Hum Reprod. 2008 Jan;23(1):46-53. Epub 2007 Nov 7. PubMed
PMID: 17989069.
Yong, H-L. Effect of Making a Hole in Zona Pellucida by Laser on Hatching of Frozen-thawed ICR
Mouse Embryos. Korean Journal of Embryo Transfer / v.23, no.1, 2008, pp.1-4. (Korean: Abstract in
English
2007

Hamilton Thorne, Inc., 100 Cummings Center, Suite 465E, Beverly, MA 01915-6143 USA, 978.921.2050, 800.323.0503, Fax: 978.921.0250 Egli D, Rosains J, Birkhoff G, Eggan K. Developmental reprogramming after chromosome transfer
into mitotic mouse zygotes. Nature. 2007 Jun 7;447(7145):679-85. PubMed PMID: 17554301.
Hall VJ, Compton D, Stojkovic P, Nesbitt M, Herbert M, Murdoch A, Stojkovic M. Developmental
competence of human in vitro aged oocytes as host cells for nuclear transfer. Hum Reprod. 2007
Jan;22(1):52-62. Epub 2006 Sep 6. PubMed PMID: 16957049.
Poueymirou WT, Auerbach W, Frendewey D, Hickey JF, Escaravage JM, Esau L, Doré AT, Stevens
S, Adams NC, Dominguez MG, Gale NW, Yancopoulos GD, DeChiara TM, Valenzuela DM. F0
generation mice fully derived from gene-targeted embryonic stem cells allowing immediate phenotypic
analyses. Nat Biotechnol. 2007 Jan;25(1):91-9. Epub 2006 Dec 24. PubMed PMID: 17187059.
2006

Tanaka N, Takeuchi T, Neri QV, Sills ES, Palermo GD. Laser-assisted blastocyst dissection and
subsequent cultivation of embryonic stem cells in a serum/cell free culture system: applications and
preliminary results in a murine model. J Transl Med. 2006 May 8;4:20. PubMed PMID: 16681851;
PubMed Central PMCID: PMC1479373.
2005

Hartshorn C, Anshelevich A, Wangh LJ. Laser zona drilling does not induce hsp70i transcription in
blastomeres of eight-cell mouse embryos. Fertil Steril. 2005 Nov;84(5):1547-50. PubMed PMID:
16275269.
Hamilton Thorne, Inc., 100 Cummings Center, Suite 465E, Beverly, MA 01915-6143 USA, 978.921.2050, 800.323.0503, Fax: 978.921.0250

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